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Tag Archives: genomics
Towards unrestricted use of public genomic data
Last week, a friend sent me this policy forum article published in Science. Fifty co-authors, mostly tenured and from prestigious universities, some of them among my dearest idols, have written this piece to call for publicly available genome data. What … Continue reading
Posted in career, community, data archiving, genomics, science publishing
Tagged career, genomics, open science
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Symbiotic organs shaped by distinct modes of genome evolution in cephalopods
Last week I was whining about gaps in our understanding of evolutionary processes in the ocean. The universe heard me, and today I am satisfied to write about the published genome of Euprymna scolopes – the Hawaiian bobtail squid and … Continue reading
Posted in Coevolution, evolution, genomics, microbiology, next generation sequencing, Symbiosis
Tagged Evolution, genomics, Squid, symbiosis, transcriptomics
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Conference catch-up: The many colors of snow
Red snow … watermelon snow … green snow … did you know that snow came in so many different colors? I had never heard of watermelon ice (#🍉❄) until a talk given by Robin Kodner from Western Washington University at … Continue reading
Posted in adaptation, bioinformatics, citizen science, community ecology, evolution, fieldwork, mating system, microbiology, natural history, phylogenetics, phylogeography, population genetics, selection, speciation, transcriptomics
Tagged biogeochemistry, Chlamydomonas nivalis, clonality, conference, ecology, Evolution, genetics, genomics, geoecology, life cycles, Snow algae, species, workshop
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Microbiomes of a small conference
The conference season is almost over. There are still a few gems out there worth attending before school starts. I just came back from the Lake Arrowhead Microbial Genomics Conference which took place at a UCLA resort in the mountains. … Continue reading
Posted in blogging, career, community, conferences, evolution, genomics
Tagged conference, ecological genomics, Evolution, genomics, metagenomics, microbiome, social media
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Major new microbial groups expand diversity and alter our understanding of the tree of life
I still believe in revolutions. And sometimes they just happen, almost unnoticed. One such revolution happened on a boring 11th of April 2016 when Laura Hug et al. published their new tree of life in the journal of Nature Microbiology. … Continue reading
Visualize your genome assemblies
Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily), is a program that creates visualisations of sequence assemblies that you can interact with. When assembling a genome with your favorite assembler, you are usually building graphs, from which … Continue reading
We have the technology. Is sequencing getting better, smaller, faster?
Okay, I know some version of the phrase “recent developments in rapid and affordable sequencing have made blah blah blah possible…” is something you’ve probably read 10,000 times. However, third-generation sequencing platforms have turned out to be pretty darn astounding. … Continue reading
Posted in bioinformatics, evolution, fieldwork, genomics, methods, next generation sequencing
Tagged genomics, MinION, NGS, third-generation sequencing
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Small Molecules, Big Differences
Mary Latimer wrote this post as a final project for Stacy Krueger-Hadfield’s Science Communication course at the University of Alabama at Birmingham. She is a third year PhD student at UAB studying miRNAs and methionine restriction. Her hobbies include cats, netflix, … Continue reading
Posted in bioinformatics, blogging, evolution, genomics, natural history, next generation sequencing, RNAseq
Tagged genomics, micro-RNAs, scicomm, Science Communication, Stress
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Hybridization and adaptive radiations
As an iconic system in evolutionary biology, I’ve always been interested in African cichlids and the origins of their diversity1. These cichlids represent an adaptive radiation; they’ve evolved rapidly from a single origin to exploit and speciate into open niches … Continue reading
Diving into the inbreeding depression
This post is going to be a little melodramatic, but I hope that despite all the reading on inbreeding depression, you won’t get depressed. As the media finally started feeding us all the catastrophic news about the impact of global … Continue reading
Posted in conservation, genomics, population genetics, theory
Tagged genomics, inbreeding, inbreeding depression, Isle Royale wolves, pedigree
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