Tag Archives: genomics

It’s the city life for me… or maybe not.

Posted on 29 May, 2020 by Stacy Krueger-Hadfield

Michael Fitch wrote this post as part of Dr. Stacy Krueger-Hadfield’s Evolution course at the University of Alabama at Birmingham. He completed a B.S. in Biology from the UAB and is currently considering entering the Master’s program.  Current interests… all over … Continue reading →

Posted in bioinformatics, blogging, community ecology, comparative phylogeography, conservation, ecology, evolution, genomics, mammals, population genetics, Science Communication | Tagged , , , , , , , | Leave a comment

Asteroids and Pandemics

Posted on 27 April, 2020 by Katharine Coykendall

For whatever reason, viral disease and pandemics have been on my mind, so it’s no surprise that a recent paper in Molecular Ecology caught my attention. It blends the existential dread of global pandemics with the increasing panic concerning the … Continue reading →

Posted in conservation, ecology, genomics, transcriptomics | Tagged , , , , , | Leave a comment

Inbreeding and the cougar genome

Posted on 21 February, 2020 by Kathleen Grogan

This week, some of my favorite #scicomm games on Twitter are teaming up with March Mammal Madness to reveal this year’s #2020MMM contestants in my favorite “battle of the fittest.” Specifically, today (2/21/2020) at 12:30 pm EST, Dr. Michelle LaRue … Continue reading →

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What next for DNA barcoding?

Posted on 25 July, 2019 by Alex Twyford

I’m a late adopter of DNA barcoding. As a botanist it has often felt that DNA barcoding wasn’t really for me. Unlike in animals, where the mitochondrial gene CO1 often tracks species boundaries, in plants, there is rarely an exact … Continue reading →

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Towards unrestricted use of public genomic data

Posted on 3 February, 2019 by Laetitia Wilkins

Last week, a friend sent me this policy forum article published in Science. Fifty co-authors, mostly tenured and from prestigious universities, some of them among my dearest idols, have written this piece to call for publicly available genome data. What … Continue reading →

Posted in career, community, data archiving, genomics, science publishing | Tagged , , | 1 Comment

Symbiotic organs shaped by distinct modes of genome evolution in cephalopods

Posted on 12 January, 2019 by Laetitia Wilkins

Last week I was whining about gaps in our understanding of evolutionary processes in the ocean. The universe heard me, and today I am satisfied to write about the published genome of Euprymna scolopes – the Hawaiian bobtail squid and … Continue reading →

Posted in Coevolution, evolution, genomics, microbiology, next generation sequencing, Symbiosis | Tagged , , , , | 1 Comment

Conference catch-up: The many colors of snow

Posted on 3 December, 2018 by Stacy Krueger-Hadfield

Red snow … watermelon snow … green snow … did you know that snow came in so many different colors? I had never heard of watermelon ice (#🍉❄) until a talk given by Robin Kodner from Western Washington University at … Continue reading →

Posted in adaptation, bioinformatics, citizen science, community ecology, evolution, fieldwork, mating system, microbiology, natural history, phylogenetics, phylogeography, population genetics, selection, speciation, transcriptomics | Tagged , , , , , , , , , , , , | Leave a comment

Microbiomes of a small conference

Posted on 23 September, 2018 by Laetitia Wilkins

The conference season is almost over. There are still a few gems out there worth attending before school starts. I just came back from the Lake Arrowhead Microbial Genomics Conference which took place at a UCLA resort in the mountains. … Continue reading →

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Major new microbial groups expand diversity and alter our understanding of the tree of life

Posted on 18 March, 2018 by Laetitia Wilkins

I still believe in revolutions. And sometimes they just happen, almost unnoticed. One such revolution happened on a boring 11th of April 2016 when Laura Hug et al. published their new tree of life in the journal of Nature Microbiology. … Continue reading →

Posted in bioinformatics, community ecology, evolution, genomics, metagenomics, microbiology, next generation sequencing, phylogenetics | Tagged , , , , , , , | 1 Comment

Visualize your genome assemblies

Posted on 18 December, 2017 by Elin Videvall

Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily), is a program that creates visualisations of sequence assemblies that you can interact with. When assembling a genome with your favorite assembler, you are usually building graphs, from which … Continue reading →

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