Category Archives: bioinformatics

Everything About Ant Reproductive Biology is Bizarre

Sam Gregory wrote this post as a project for Dr. Stacy Krueger-Hadfield’s Scientific Communication course at the University of Alabama at Birmingham. Sam earned a BS in biology and BFA in studio art from Birmingham-Southern College, and is currently pursuing an … Continue reading

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Bobbing for Bobcats

Catherine Sirgo wrote this post as a part Dr. Stacy Krueger-Hadfield’s Science Communication course at the University of Alabama at Birmingham. Catherine is a Master’s Candidate within Dr. Thane Wibbels’ lab researching conservation for the Mississippi Diamondback Terrapin in Alabama. Catherine earned … Continue reading

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Digging for Knowledge … and Nematodes

Hannah Oswalt wrote this post as a part Dr. Stacy Krueger-Hadfield’s Science Communication course at the University of Alabama at Birmingham. Hannah is working towards her PhD in Dr. Chuck Amsler’s lab where she is investigating the effects of ocean acidification on macroalgae … Continue reading

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Of microbes and whales

At the end of January, the International Society for Microbial Ecology (ISME) journal put out a list: “Readers’ Choice: The best of The ISME Journal 2019” . I don’t know about you (my fellow scientists also with 35+ chrome tabs … Continue reading

Posted in bioinformatics, community ecology, ecology, mammals, microbiology | Tagged , , , | 1 Comment

Snapshots of Biodiversity: eDNA as a methodology for species detection

Nicole Conner wrote this post as a project for Stacy Krueger-Hadfield’s Conservation Genetics course at the University of Alabama at Birmingham.  She is a Master’s student in Dr. Thane Wibbels’ lab where she is developing new protocol to detect diamondback terrapins off … Continue reading

Posted in bioinformatics, blogging, citizen science, community, conservation, DNA barcoding, ecology, evolution, fieldwork, metagenomics, natural history | Tagged , , , , | 1 Comment

Where credit is due

I am trying to keep this short. You might remember my recent blog post on data sharing. I basically wanted to point out that data acquisition can be an art on its own. It can take months of planning, applying … Continue reading

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Conference catch-up: The many colors of snow

Red snow … watermelon snow … green snow … did you know that snow came in so many different colors? I had never heard of watermelon ice (#🍉❄) until a talk given by Robin Kodner from Western Washington University at … Continue reading

Posted in adaptation, bioinformatics, citizen science, community ecology, evolution, fieldwork, mating system, microbiology, natural history, phylogenetics, phylogeography, population genetics, selection, speciation, transcriptomics | Tagged , , , , , , , , , , , , | Leave a comment

Cricket Plays a Song of Systems Biology

Mina Momeni wrote this post as a final project for Stacy Krueger-Hadfield’s Science Communication course at the University of Alabama at Birmingham. Mina earned her MS degree and is now a research technician at UAB in Dr. Nicole Riddle‘s lab. … Continue reading

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The eyes have it!

Eyes are pretty darn complicated, which makes them cool models for studying complex trait evolution.  Maybe the first time I realized how interesting eyes are when I saw this by the oatmeal about the amazing-ness of the mantis shrimp (are they your … Continue reading

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Metabarcoding for every body, every habitat, every time

The immediate reason why I wanted to write about Boosting DNA metabarcoding for biomonitoring with phylogenetic estimation of operational taxonomic units’ ecological profiles is its usefulness for the scientific community and the effort of the authors to make their study reproducible. … Continue reading

Posted in bioinformatics, community, community ecology, DNA barcoding, fieldwork, metagenomics, next generation sequencing, phylogenetics, R | Tagged , , , , , , | 1 Comment