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Tag Archives: gene flow
Just So Stories addendum: How the stickleback keeps getting its stickles
Model organisms have been essential tools for genetics research since the field was formed. Kelle Freel discussed the characteristics that make for a good model organism in a previous TME post. Briefly, traits like short generation time, lots of offspring, … Continue reading
Posted in adaptation, evolution, genomics, natural history, selection, stickleback
Tagged adaptation, gene flow, natural selection, selection, stickleback
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Genomic signatures of ancient rendezvous and separation in elephant evolution
Evidence from various levels of the tree of life is showing that we’ve been picturing ancient encounters between related species all wrong and admixture events are probably more common than expected. Even rendezvous among primates, caniforms, and majestic proboscideans often … Continue reading
Posted in conservation, evolution, genomics, hybridization, natural history, Paleogenomics, phylogeography
Tagged admixture, ancient DNA, conservation, elephants, Evolution, gene flow, hybridization
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Habitat-matching dispersal facilitates local adaptation
Migration disrupts local adaptation. At least, this is the first reaction I have when I consider these two processes. In fact, my initial thought is almost always: how strong does selection have to be to overcome gene flow? Gene flow … Continue reading
Posted in adaptation, evolution, Uncategorized
Tagged adaptation, experimental evolution, gene flow
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Shared patterns of genomic diversity across populations of distantly related taxa
Genomic diversity is shaped by the complex interplay between the effects of genetic drift and natural selection among populations. Several of these effects, especially those of linked selection at neutral sites, adaptive introgression, and barriers to migration (often called “genomic … Continue reading
Unbalanced population sampling and STRUCTURE
The utility and intuition offered by the program STRUCTURE, and more generally, the ‘admixture’ model of Pritchard et al. (2000) are unquestioned – with tens of thousands of citations, it retains its lead among the most popular population genetics software. … Continue reading
Posted in bioinformatics, genomics, howto, methods, population genetics, software, STRUCTURE
Tagged gene flow, methods, population structure
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On (mis)interpreting STRUCTURE/ADMIXTURE results
STRUCTURE, ADMIXTURE and other similar software are among the most cited programs in modern population genomics. They are algorithms that estimate allele frequencies and admixture proportions under the premise that sampled genotypes are derived from one of “K” ancestral populations, … Continue reading
The Great Migration and African-American Genomic History
Over 45 million African-Americans share a recent common history largely shaped by “The Great Migration” (1910-1970) from out of the Southern United States. And yet, the admixture history of the African-American community, and its consequences for public health are little … Continue reading
Posted in genomics, population genetics, United States
Tagged Evolution, gene flow, Illumina, NGS, population genetics, population structure
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Ice-Age Euro-trips
Recent works that attempt to get at human migrations inside Europe paint a complex portrait of migratory events, admixture with archaic hominids, and adaptive evolution to new geographies, and a changing global climate. Analyzing whole genomes of 51 ancient humans … Continue reading