Monthly Archives: December 2014

C.L. Gloger's favorite owl

Biologists love clines. We’ve been mentally masticating on clines for decades. Clines in body size. Clines in color. Clines in heart size! Clines that go in circles! Recognizing clinal patterns in phenotypes or genotypes is fun, but discovering the mechanisms behind … Continue reading

Posted in adaptation, Molecular Ecology, the journal, population genetics | Tagged , , | Leave a comment

Increase your broader impacts with Data Nuggets

  This week we have a special guest post by Elizabeth Schultheis, a PhD candidate at Michigan State University and the Kellogg Biological Station, to describe her Data Nuggets project. Previous guest posts have discussed other great projects happening in the … Continue reading

Posted in career, citizen science, community, funding, methods | 1 Comment

Identifying and correcting errors in draft genomes

Over the past decade we have seen an exponential increase in the number of sequenced, assembled, and annotated genomes. These these genomes are essential for pretty much any genomics research. If you want to sequence the genome, transcriptome, epigenome, or … Continue reading

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Et tu, Brute? Black-legged ticks use genes co-opted from bacteria to fight bacterial infection

Horizontal gene transfer occurs when genes are passed between individuals by mechanisms other than reproduction. It is common in bacteria and occasionally happens between highly divergent groups (for example, monocot genes transferred to eudicots, fungal genes transferred to aphids, bacterial genes transferred … Continue reading

Posted in adaptation, genomics, horizontal gene transfer, microbiology | Leave a comment

"Hurrah! Hurrah!" DNA barcoding and the lost story of Darwin's meadow

Five years ago, I was a co-author on a consortium paper in PNAS that recommended two genes to serve as universal markers for DNA-based identification (DNA barcoding*) of plants. Five years ago, the world celebrated Charles Darwin’s 200th birthday. You … Continue reading

Posted in DNA barcoding, natural history | Tagged , | 1 Comment

Week in review, 6 December 2014

It’s been a busy week at *The Molecular Ecologist! Here’s a roundup of our latest posts:* Melissa pointed out a study of compensatory evolution in yeast, in which natural selection found a way around the loss of many different genes. … Continue reading

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Exotic gene flow surveillance

Exotic forest plantations often cover large areas and, as such, may contribute female gametes, male gametes and/or zygotes to native stands. In seed plants, these three components of exotic gene flow have not been distinguished, though they will have different … Continue reading

Posted in conservation, Molecular Ecology, the journal, population genetics, Uncategorized | Leave a comment

The Evolution of Recombination

In a recent publication, Lesecque et al (2014). provide key evidence that fills in some of the blanks to an age old question – how do recombination hotspots evolve? Their analyses of major PRDM9 (a polymorphic zinc finger protein with … Continue reading

Posted in adaptation, genomics, mutation, population genetics, theory | Tagged , | 2 Comments

Isolation by environment explains why the grass isn't always greener

Ever since Sewall Wright introduced isolation by distance in 1943, the interplay between genetic differentiation and geographic distance has been a foundational, sometimes frustrating, aspect of population genetics studies. But distance isn’t just distance. The walk to my car isn’t any longer when … Continue reading

Posted in methods, Molecular Ecology, the journal, population genetics | Tagged , , , | 2 Comments

The genetics of another multi-level society

Long-time readers (i.e., “for more than one week”) of The Molecular Ecologist will notice that this is the 2nd post on the socio-genetics of a primate multi-level society. The first being Melissa’s post last week that covered my recent paper … Continue reading

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