Monthly Archives: October 2014

What we're reading: The diversification of bacteria, landscape genomics of cottonwood, and the skewed sex ratio of science

In the journals Plata G., C.S. Henry, and D. Vitkup. 2014. Long-term phenotypic evolution of bacteria. Nature. doi: 10.1038/nature13827. Overall, bacterial phenotypic evolution can be described by a two-stage process with a rapid initial phenotypic diversification followed by a slow … Continue reading

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Haldane's Sieve

This week we have a guest post by Graham Coop and Joe Pickrell. Here, Graham [GC] and Joe [JKP] answer a few questions we had about the development and future of their blog, Haldane’s Sieve. If you’re interested in population genetics … Continue reading

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Genetics reveal the diversity of pollinators' other cargo: fungi

The following is a cross-posting from the Stanford CEHG Blog by Jeremy Hsu, a graduate student in Elizabeth Hadley’s lab at Stanford University. Many animals that visit flowers are known to carry microfungal communities; these fungi are important ecologically because … Continue reading

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What we're reading: The color of cichlids, projected genomes, and simplifying NSF proposals

In the journals Albertson RC, KE Powder, Y Hu, KP Coyle, RB Roberts, and KJ Parsons. 2014. Genetic basis of continuous variation in the levels and modular inheritance of pigmentation in cichlid fishes. Molecular Ecology, 23: 5135–5150. doi: 10.1111/mec.12900. … … Continue reading

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What we're reading: A meta-analysis of meta-analyses, plants' cytoplasmic genomes, and science under political attack

In the journals Koricheva, J. and J. Gurevitch. 2014. Uses and misuses of meta-analysis in plant ecology. Journal of Ecology, 102: 828–844. doi: 10.1111/1365-2745.12224. We found many cases of imprecise and inaccurate usage of the term ‘meta-analysis’ in plant ecology, … Continue reading

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What we're reading: QTLs of pine growth, climate-niche evolution, and the shape of Twitter conversations

In the journals Li Z., H.R. Hällingback, S. Abrahamsson, A Fries, B.A. Gull, M.J. Sillanpää and M.R. García-Gil. 2014. Functional multi-locus QTL mapping of temporal trends in Scots pine wood traits. G3: Genes | Genomes | Genetics. doi: 10.1534/g3.114.014068. Two … Continue reading

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How many markers does it take to make a dataset "genomic"?

A new paper in Ecology Letters by Matthew Fitzpatrick and Stephen Keller proposes to use some a class of statistical methods developed for understanding the distribution of species in different environments to understand the distribution of genetic variants in different … Continue reading

Posted in association genetics, genomics, next generation sequencing, population genetics, software | 7 Comments

House science committee is digging for dirt in NSF's confidential records of peer review

ScienceInsider reports that aides for the U.S. House Committee on Science, Space, and Technology have been spending the summer digging through records of grant the grant review process that the National Science Foundation usually keeps confidential: The Republican aides were … Continue reading

Posted in funding, NSF, politics, United States | 1 Comment

What we're reading: Sorting out whole-genome duplication, adaptation without tradeoffs, and is science leaving its logistic growth phase?

In the journals McGrath CL, J-F Gout, P Johri, TG Doak, and M Lynch. Differential retention and divergent resolution of duplicate genes following whole-genome duplication. 2014. Genome Res. 24: 1665-1675. doi: 10.1101/gr.173740.114. Finally, multiple sources of evidence indicate that [Paramecium] … Continue reading

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We're looking for a few good Molecular Ecologists (UPDATED)

Update, 6 October: Thanks to everyone who has written in to apply for a position! I’ll try to respond to your inquiries in the next day or so; we’ll continue to accept applications until next Monday, 13 October before making … Continue reading

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