Category Archives: metagenomics

A sponge and its symbionts, using genomics to unravel complex relationships

The ocean is full of interesting organisms and even more fascinating (as well as difficult to tease apart) are the interactions among them. From deep sea giant tube worms, to the adorable bobtail squid, symbioses have a central role, and … Continue reading

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The importance of culturing the uncultured, delving into the microbial consortia in the human gut

The molecular side of ecology has grown by leaps and bounds in recent decades. The review we covered not too long ago, did a nice job of summarizing many key aspects highlighting the importance of this relatively new molecular view … Continue reading

Posted in community ecology, genomics, medicine, metagenomics, microbiology | Tagged , , | 1 Comment

There are more microbes than meet the eye: exploring the genomic diversity in an aquifer

First: it’s Tuesday, November 8th, 2016 – before you even think about putting your feet up and reading this post, I hope you’ve managed to wrangle yourself one of those highly prized “I voted” stickers. Now, on to more microbial … Continue reading

Posted in bioinformatics, community ecology, metagenomics, microbiology, next generation sequencing | Tagged , , | 1 Comment

Making ecology “count”: a review of the why and how of molecular ecology  

It’s likely that everyone has been asked by either a friend or family member “What do you do?” Which, depending on what level of detail you shoot for, might be relatively straight forward. The follow-up question, however, can be a … Continue reading

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It’s not the size that counts: teeny tiny SAR11 bacteria play a big role in our oceans

Microbes account for a huge chunk of the diversity on this planet, are essential in all sorts of biogeochemical processes, and we are still figuring out how everything is related. Teeny tiny bacterial cells are abundant both on land as … Continue reading

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When your programming may be inadequate to the task: new options for metagenome analysis

There’s a lot of data in the form of metagenomes out there, and picking apart those mountains of data to uncover meaningful results is difficult. Recently, we received a suggestion from a reader to discuss a recent program (CLARK-S) developed … Continue reading

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Of microbes and men: Testing the neutral theory with the human microbiome

There is no doubt that one of the hottest current topics in microbiology revolves around the human microbiome. There have been a suite of recent studies we’ve highlighted, on organisms ranging from bees and mice, to humans. A quick google scholar search identifies … Continue reading

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